Where can i find chip-seq peak files except ENCODE for various Transcription factors in various cell lines(e.g. i am looking CTCF with MCF7 binding sites)?
Iam looking for files with hundreds or thousands of genes.
See these articles:
Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA
Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data
"Genomic binding sites for CTCF,
H3K27ac, and H3K27me3 identified
in K-562 cells using the MAGnify
System and the Ion Proton
were compared to ENCODE project
Check the Ensembl Regulatory Build. You will find Roadmap and Blueprint there, besides ENCODE. Check one of the Ensembl blog posts on the addition of Blueprint data.