Question: Draw circular genome with selected features
0
gravatar for ThePresident
22 months ago by
ThePresident100
ThePresident100 wrote:

Hi guys,

What's the easiest to draw a circular map of a bacterial genome and highlight some specific genes or regions and put some coordinates/scale around?

Ex. Genome lenght is 2,500,000 bp and I want to draw it as a circle and highlight regions 1000-1500, XXX-YYY and so on.

Circos is too sophisticated for what I want to do and I have hard time understanding how I would do it with GRanges (still open to that idea if someone can point me the way).

Thanks,

TP

circular plots R • 1.1k views
ADD COMMENTlink modified 22 months ago by EagleEye5.6k • written 22 months ago by ThePresident100
3
gravatar for Vijay Lakhujani
22 months ago by
Vijay Lakhujani3.0k
India
Vijay Lakhujani3.0k wrote:

You can give a try to CiVi: User-friendly Circular Visualization for microbial genomes

http://civi.cmbi.ru.nl/

ADD COMMENTlink written 22 months ago by Vijay Lakhujani3.0k

This is exactly what I was looking for. Thanks!

ADD REPLYlink written 22 months ago by ThePresident100

you should accept an answer if that really helped

accept or upvote

ADD REPLYlink written 15 days ago by Vijay Lakhujani3.0k
1
gravatar for EagleEye
22 months ago by
EagleEye5.6k
Sweden
EagleEye5.6k wrote:

Homer simplified circos for us,

http://homer.salk.edu/homer/interactions/circos.html

ADD COMMENTlink modified 22 months ago • written 22 months ago by EagleEye5.6k

Nice resource, will give it a try also :)

ADD REPLYlink written 22 months ago by ThePresident100
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