Question: Draw circular genome with selected features
0
gravatar for ThePresident
21 months ago by
ThePresident90
ThePresident90 wrote:

Hi guys,

What's the easiest to draw a circular map of a bacterial genome and highlight some specific genes or regions and put some coordinates/scale around?

Ex. Genome lenght is 2,500,000 bp and I want to draw it as a circle and highlight regions 1000-1500, XXX-YYY and so on.

Circos is too sophisticated for what I want to do and I have hard time understanding how I would do it with GRanges (still open to that idea if someone can point me the way).

Thanks,

TP

circular plots R • 992 views
ADD COMMENTlink modified 21 months ago by EagleEye5.3k • written 21 months ago by ThePresident90
3
gravatar for Vijay Lakhujani
21 months ago by
Vijay Lakhujani2.5k
India
Vijay Lakhujani2.5k wrote:

You can give a try to CiVi: User-friendly Circular Visualization for microbial genomes

http://civi.cmbi.ru.nl/

ADD COMMENTlink written 21 months ago by Vijay Lakhujani2.5k

This is exactly what I was looking for. Thanks!

ADD REPLYlink written 21 months ago by ThePresident90
1
gravatar for EagleEye
21 months ago by
EagleEye5.3k
Sweden
EagleEye5.3k wrote:

Homer simplified circos for us,

http://homer.salk.edu/homer/interactions/circos.html

ADD COMMENTlink modified 21 months ago • written 21 months ago by EagleEye5.3k

Nice resource, will give it a try also :)

ADD REPLYlink written 21 months ago by ThePresident90
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