Entering edit mode
7.6 years ago
bigheiniu
•
0
Whenever I using bwa mem command:
bwa mem -t 10 -M ${classpath}/genome.fa 1.fastq > test.sam
or like that:
bwa mem -t 10 ${classpath}/genome.fa 1.fastq 2.fastq >test.sam
it just output the error message:
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[fread] Unexpected end of file
Is the problem of bwaIndex file ?
Thank you for your suggestion.