what is the go-to way for mapping Entrez-Protein-ID to Uniprot?
I usually use the Uniprot-Mappingservice but unfortunately it doesn't cover Entrez-Proteins.
These are RefSeq/Genpept ID's or something else?
They are Entrez-Protein-IDs, at least thats what the column in my database states.
Can you post a few examples?
If the answer provided by @EagleEye is satisfactory then you are all set.
Here are some sample-entries:
Entrez Protein AAF22032
Entrez Protein BAC85338
Entrez Protein BAE48238
Entrez Protein BAB71206
Entrez Protein BAC85939
In the linked post from @EagleEye , BioMart is proposed to create a mapping-file, but I can't find an option to include Entrez IDs.
These appear to be cDNA's (that may also be translated). From the examples you posted here I was able to convert 4 out of 5 using the UniProt ID converter tool and "EMBL/GenBank/DDBJ CDS" as the "From" option. See how many you can get that way.
Wow, thanks alot!
I could map >90% of 40k IDs, which is more than enough for what I'm doing.
You will find information you needed in this link. I guess you are looking for mapping Entrez ids to Uniprot Ids.
C: Reliable Database containing info for Entrez ID's and Entrez Symbols