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Question: seattle seq annotation tool
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gravatar for marwa.cs91
3.6 years ago by
marwa.cs91 • 30
Egypt
marwa.cs91 • 30 wrote:

Hello all, I have a list of SNPs like(rs429358,rs2007332 and ......). How can I use seattle seq tool for SNPs annotation)?

thanks in advance
seattle seq snp annotation • 1.1k views
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modified 3.6 years ago • written 3.6 years ago by marwa.cs91 • 30
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gravatar for WouterDeCoster
3.6 years ago by
WouterDeCoster ♦ 43k
Belgium
WouterDeCoster ♦ 43k wrote:

I assume you have read this . If so, you'll know that your SNP list cannot be directly used as input for the tool. So essentially this means that your question actually is: how do I convert SNP IDs from dbSNP to an input file that I can use in seattle seq tool? You can fill in your SNPs here to retrieve in batch mode information in different formats.
ADD COMMENT • link written 3.6 years ago by WouterDeCoster ♦ 43k
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gravatar for marwa.cs91
3.6 years ago by
marwa.cs91 • 30
Egypt
marwa.cs91 • 30 wrote:

Thanks WouterDeCoster for your help

ADD COMMENT • link written 3.6 years ago by marwa.cs91 • 30

You are very welcome. Please use ADD COMMENT to reply to earlier posts, as such this thread remains logically structured and easy to follow. If my post resolved your question, please mark the answer as accepted.

ADD REPLY • link written 3.6 years ago by WouterDeCoster ♦ 43k
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