Question: Calculate the coverage of genes
0
gravatar for Alex
3.4 years ago by
Alex30
America
Alex30 wrote:

Hi,everyone , There I want to calculate the RNAseq reads coverage the numbers of genes and sequences from reference genome and I have bam files ,did anyone knows how to calculate it ? Thanks Alex

rna-seq • 1.3k views
ADD COMMENTlink modified 3.4 years ago by Devon Ryan94k • written 3.4 years ago by Alex30
1
gravatar for Devon Ryan
3.4 years ago by
Devon Ryan94k
Freiburg, Germany
Devon Ryan94k wrote:

It's a bit hard to understand exactly what you want, but I assume you mean you want to find the number of alignments per gene. For that, use featureCounts from the subRead package.

ADD COMMENTlink written 3.4 years ago by Devon Ryan94k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2265 users visited in the last hour