I tried to convert SRA to fastq using SRATOOLKIT 2.6.3, fastq-dump. The archive is from a ChIP-seq (single reads). This is my command line:
./fastq-dump --split-3 $DIR/SRR3722567.sra > $DIR/SRR3722567.fastq
It produces a fastq file which is empty (Written 34892751 spots for $DIR/SRR3722567.sra). I also tried the option --split-files but it produced error. How can I do ?
Thanks a lot for your help !