Question: How can I get gene annotations for hg38 in R?
0
gravatar for Tori
22 months ago by
Tori80
Finland
Tori80 wrote:

How can I get table like following in R for hg38?

RefseqID    Symbol  Description EntrezID
NM_000014   A2M alpha-2-macroglobulin   2
NM_000015   NAT2    N-acetyltransferase 2 (arylamine N-acetyltransferase)   10
NM_000016   ACADM   acyl-CoA dehydrogenase, C-4 to C-12 straight chain  34
NM_000017   ACADS   acyl-CoA dehydrogenase, C-2 to C-3 short chain  35
NM_000018   ACADVL  acyl-CoA dehydrogenase, very long chain 37
R hg38 annotation • 730 views
ADD COMMENTlink modified 22 months ago by WouterDeCoster32k • written 22 months ago by Tori80
1
gravatar for WouterDeCoster
22 months ago by
Belgium
WouterDeCoster32k wrote:

I usually use this package: https://github.com/stephenturner/annotables Alternatively, biomaRt would be your friend.

ADD COMMENTlink written 22 months ago by WouterDeCoster32k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 942 users visited in the last hour