Question: How can I get gene annotations for hg38 in R?
0
gravatar for Tori
24 months ago by
Tori80
Finland
Tori80 wrote:

How can I get table like following in R for hg38?

RefseqID    Symbol  Description EntrezID
NM_000014   A2M alpha-2-macroglobulin   2
NM_000015   NAT2    N-acetyltransferase 2 (arylamine N-acetyltransferase)   10
NM_000016   ACADM   acyl-CoA dehydrogenase, C-4 to C-12 straight chain  34
NM_000017   ACADS   acyl-CoA dehydrogenase, C-2 to C-3 short chain  35
NM_000018   ACADVL  acyl-CoA dehydrogenase, very long chain 37
R hg38 annotation • 765 views
ADD COMMENTlink modified 24 months ago by WouterDeCoster33k • written 24 months ago by Tori80
1
gravatar for WouterDeCoster
24 months ago by
Belgium
WouterDeCoster33k wrote:

I usually use this package: https://github.com/stephenturner/annotables Alternatively, biomaRt would be your friend.

ADD COMMENTlink written 24 months ago by WouterDeCoster33k
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