I'm not quite certain how to signify different experiments / different replicas when using kissplice. For example, in trinity, this can be defined through a separate textfile, or in the command itself. Is there a similar syntax for kissplice?
Just to be sure I understand completely... is kissplice parsing the order of the inputs or the names of the files? If the later, is it looking specifically for the c's and r's, or does it look for matches? (e.g. I could put exp1rep1, exp1rep2...)
Thanks for your help!