How could I use the raw files from NCBI GEO database to visualizes in Gbrowse, something like discussed in http://biostar.stackexchange.com/questions/1459/how-do-i-set-up-gbrowse-for-comparative-coverage ( ie in wiggle_xyplot)? The problem I am facing is each entries ( eg: GSE8169, GSE20176 ) in ftp are in different format (.soa ,.cel, txt etc) which I am not familiar with. Do you have any suggestion for me how can i convert them to gff/wig in order to use in? Its my first time I am using chip-chip/seq data. my final objective is to visualize the raw data of different studies together.
Thanking you in advance, Gvj