Entering edit mode
7.4 years ago
bxia
▴
180
Trying to use fastq dump to separate pair end reads file from SRA files.
fastq-dump --split-3 xxx.sra
it worked for a few files but for some file, it throw the error:
locate_module.c(591):ERROR:106: Magic cookie '#%Module' missing in '/fastq-dump' ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for '/sratoolkit/bin'
Anyone know what is going on?
Thanks
Are you using the latest version of SRAtoolkit? That would be the first thing to check.
Yes, just download and installed it on my new machine..it works on most samples.