I have annotated a genome using maker and the json output can be used with jbrowse. All data are available on my local PC. So far so good, but now I would like to export the annotated regions of the json tree into gff or fasta files to use it e.g. for a local blast search (via viroblast). I now, that I can export a single file, but I've got more than 3000 annotated genes. Unfortunately, I found several tools to get json format from many other file formats but not the other way round.
And please keep in mind, that - unfortunately - I am a newby to both: genome annotation and unix based server systems ...
Is there any simple solution?