Question: generate oncoprint from input VCF file
2
gravatar for shu2010
3.8 years ago by
shu201020
shu201020 wrote:

Hi, Are there any packages to visualise the variants as a oncoprint from input VCF files? More specifically, I have a joint called, VEP annotated VCF file or GVCF file from germline samples. I intend to convert the GVCF file into MAF format(for visualisation) using the VCF2MAF package and not sure if it is up for the task? Appreciate any help/suggestions !! Thanks Shu

vcf2maf oncoprint next-gen • 1.4k views
ADD COMMENTlink modified 5 months ago by Thind amarinder90 • written 3.8 years ago by shu201020
1

Maybe one can try Vcf2maf https://github.com/mskcc/vcf2maf

ADD REPLYlink written 5 months ago by Thind amarinder90

Any update to the problem?

ADD REPLYlink written 16 months ago by Shicheng Guo8.4k
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