Question: generate oncoprint from input VCF file
gravatar for shu2010
3.1 years ago by
shu201020 wrote:

Hi, Are there any packages to visualise the variants as a oncoprint from input VCF files? More specifically, I have a joint called, VEP annotated VCF file or GVCF file from germline samples. I intend to convert the GVCF file into MAF format(for visualisation) using the VCF2MAF package and not sure if it is up for the task? Appreciate any help/suggestions !! Thanks Shu

vcf2maf oncoprint next-gen • 1.1k views
ADD COMMENTlink modified 3.1 years ago by Pierre Lindenbaum126k • written 3.1 years ago by shu201020

Any update to the problem?

ADD REPLYlink written 7 months ago by Shicheng Guo8.0k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1713 users visited in the last hour