How to convert bedgraph to bigwig?
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4.8 years ago
Lila M ★ 1.1k

Hi everybody, I want to convert my bedgraph (from MACS2) into a bigwig, is there any available program different than bedgraphtobigwig (I have problems with the instalation)

Thanks

ChIP-Seq MACS • 15k views
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you'd better tell us about this:

I have problems with the instalation

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4.8 years ago
igor 12k

There should not be any installation. You just download the binary and run it.

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Go here, choose your OS, and download all the Kent binaries you need.

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I've downloaded, but when I want to run it " bedGraphToBigWig: command not found"

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set your PATH http://www.linfo.org/path_env_var.html

export PATH=$PATH:/dir1/dir2
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Is not that problem, because I'm trying to run it from the path in which is downloaded

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Try running ./bedGraphToBigWig (in current directory), not bedGraphToBigWig (searches $PATH).

You may also need to make it executable (chmod a+x ./bedGraphToBigWig)

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