Question: DNA-seq Breast Cancer dataset
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gravatar for pingEde
2.7 years ago by
pingEde30
European Union
pingEde30 wrote:

Hello!

I am trying to develop a pipeline for my breast cancer data (I have DNA-seq data from normal/tumor samples) and I would like to test it with another breast cancer dataset that also include the information of the validate variants, in order to see how many FP/FN/TN/TP I will find.

Is such dataset available?

Thank you in advance

Best regards

breast cancer pipeline dna-seq • 1.0k views
ADD COMMENTlink written 2.7 years ago by pingEde30

this paper has used a gold standard for validation of GRNs

DOI: 10.1186/gm340

they used https://static-content.springer.com/esm/art%3A10.1186%2Fgm340/MediaObjects/13073_2011_342_MOESM2_ESM.TXT as their reference network

ADD REPLYlink modified 2.7 years ago • written 2.7 years ago by Angel3.5k

thank you for your answer and your help, but I need DNA-seq data, not Gene expression...

ADD REPLYlink written 2.6 years ago by pingEde30
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