understand gene expression data
1
0
Entering edit mode
7.2 years ago
mms140130 ▴ 60

I have a file that should be about gene expression but I really don't understand what is the meaning of this data, where are the values of gene expression?

here is column 1 through 6

#rnaseq/SNPID   hg19Location    Gene    TCGA-BH-A0C0-01A    TCGA-A2-A3XY-01   TCGA-XX-A89A-01A
rnaseq  -   ?|100130426 0.0000  0.0000  0.0000
rnaseq  -   ?|100133144 7.8666  9.6884  22.3240
rnaseq  -   ?|100134869 4.9246  24.2737 27.2744
rnaseq  -   ?|10357 104.5500    213.7269    64.1427
rnaseq  -   ?|10431 1174.0521   973.0534    722.7208
rnaseq  -   ?|136542    0.0000  0.0000  0.0000
rnaseq  -   ?|155060    141.6172    448.0890    376.4761
rnaseq  -   ?|26823 1.3705  0.2633  0.4724
rnaseq  -   ?|280660    0.0000  0.0000  0.0000

can any one help

thank you,

rna-seq gene • 1.6k views
ADD COMMENT
0
Entering edit mode
7.2 years ago
EagleEye 7.5k

From the second line I can assume that

#rnaseq/SNPID : rnaseq 
hg19Location|Gene: ?|100133144 [looks like ENTREZ id]
TCGA-BH-A0C0-01A: 7.8666 
TCGA-A2-A3XY-01: 9.6884  
TCGA-XX-A89A-01A: 22.3240

The values represents normalized expression values for individual TCGA samples.
ADD COMMENT

Login before adding your answer.

Traffic: 2514 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6