Question: Diamond sequence description
0
gravatar for hlwalsh
3.8 years ago by
hlwalsh0
hlwalsh0 wrote:

I am trying to make a database using the software Diamond and I was wondering if in addition to the accession number could the sequence description also be added to the output? I have tried using both the blast tabular format and sam format and it does not produce the results I want (ex. NP_957226.1 5'-nucleotidase precursor [Danio rerio]). Thanks for your help.

rna-seq annotation • 1.2k views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by hlwalsh0
2
gravatar for buchfink
3.8 years ago by
buchfink140
buchfink140 wrote:

You can use this command line option for showing the full subject title (more details are in the manual): -f 6 qseqid stitle pident length mismatch gapopen qstart qend sstart send evalue bitscore

ADD COMMENTlink written 3.8 years ago by buchfink140

Is there also a way to set the transcripts to sense if they are antisense?

ADD REPLYlink written 3.8 years ago by hlwalsh0
0
gravatar for hlwalsh
3.8 years ago by
hlwalsh0
hlwalsh0 wrote:

Thank you! This worked.

ADD COMMENTlink written 3.8 years ago by hlwalsh0

Please use ADD COMMENT to reply to earlier answers, as such this thread remains logically structured and easy to follow.

ADD REPLYlink written 3.8 years ago by WouterDeCoster44k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2180 users visited in the last hour