Does anyone know if there is a way to conduct KEGG pathway analysis in edgeR using the Plant database only? Or any other program, for that matter? When I use the
kegga function, the results only have human KEGG IDs (hsa*). I however want to use only the information from plant species as I'm working with a plant myself.
I know that a 'manual' method exists: using the KEGG KASS site. But having to export gene list, copy, go through email verification, etc seems not so efficient especially when I want to conduct several analyses.
Thank you for your help.