I would like to find links between drugs and the differentially expressed genes we found.
I want to use cmap (https://portals.broadinstitute.org/cmap/index.jsp) with genes that are up and down regulated. These genes were calculated using RNA-seq.
Does someone know if it is possible to use RNA-seq with the cmap tool ?
I need to use grp files, which on their site it says (http://software.broadinstitute.org/cancer/software/genepattern/file-formats-guide#GRP):
That it is a set of gene names, which will not work when loaded into their cmap. In their example file it looks like :
How can i convert gene names into this ?
I am very great full for any help with this problem !