Question: Any tools to detect lncRNAs from RNA-seq data?
0
gravatar for arash.iranzadeh1980
3.4 years ago by
arash.iranzadeh198030 wrote:

Hi,

I have a set of RNA-seq data, extracted from different conditions plus the genome, the transcriptome and the genome annotation. I would like to detect lncRNA from RNA-seq data. Any tool available for this?

rna-seq • 1.1k views
ADD COMMENTlink modified 3.4 years ago by EagleEye6.6k • written 3.4 years ago by arash.iranzadeh198030
1

If you already have annotations for lncRNA then just calculate its expression by using RSEM

If not then you'd have to run Cufflinks as RABT assembly

ADD REPLYlink written 3.4 years ago by Manvendra Singh2.1k
1
gravatar for EagleEye
3.4 years ago by
EagleEye6.6k
Sweden
EagleEye6.6k wrote:

Try this pipeline.

A: Any One please provide protocol for Analysing long noncoding RNA illumina NGS da

ADD COMMENTlink written 3.4 years ago by EagleEye6.6k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1226 users visited in the last hour