how to import agilent data in r

Question

[arunmoorthy01]

I have 6 txt files which i have downloaded from geo ,i want to know how to import them to r ,what is the package used the data is agilent platform

[WouterDeCoster]

Have you tried googling? Simply searching for "import agilent microarray R" gives me already plenty of valuable hits, including the Bioconductor package agilp and the Bioconductor workflow for microarray analysis. Similarily, googling for "import geo data in R" gives me the Bioconductor GEOquery package. With just a tiny bit of effort you could have done this yourself, right?

Answer 1

[Benn]

If you want to analyze your data as well, after import, I would recommend to take a look at limma. Follow the user's guide for agilent arrays.