Question: Get DrugBank data with Python
3
gravatar for Jack
14 months ago by
Jack80
Jack80 wrote:

I'm trying to get a list of all FDA-approved drugs from DrugBank. Is there a Python or R script that can do that for me?

drugbank python • 1.2k views
ADD COMMENTlink modified 14 months ago by natasha.sernova2.9k • written 14 months ago by Jack80
1

Let's consider this Drugbank.

https://www.drugbank.ca/

There is a comprehensive guide below how to do a lot of things manually:

https://www.drugbank.ca/help

Below there is some python scripts as an artenative:

https://github.com/macarthur-lab/gene_lists

Look through the page, you will find some python script-links, for example:

https://github.com/macarthur-lab/gene_lists/blob/master/src/drug_targets.py

There are a lot of databases that provide similar information:

http://www.cureffi.org/2013/10/04/list-of-fda-approved-drugs-and-cns-drugs-with-smiles/

See this link as well: Downloading and extracting DrugBank data using R

WIKI is not a bad source of some information:

https://en.wikipedia.org/wiki/DrugBank

ADD REPLYlink modified 14 months ago • written 14 months ago by natasha.sernova2.9k
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