Question: Where can be found all the annotated miRNAs from a species?
1
gravatar for Martin B.
9 weeks ago by
Martin B.10
Basque Country
Martin B.10 wrote:

I have sequenced small RNA and predicted novel miRNAs in sheep, but the tool I used takes known miRNAs from miRBase. The problem is that that database has not been updated since 2014 and in that time many new miRNAs have been found in sheep. So I wondered were else were those miRNA submited to. In ensembl, for instance, I only find around 100 miRNAs with a name (similar to miRBase) and around 1000 predicted in silico and without any name. This is important because I need to know if my ''novel'' miRNAs are really novel or not.

ADD COMMENTlink written 9 weeks ago by Martin B.10
2
gravatar for genomax
9 weeks ago by
genomax27k
United States
genomax27k wrote:

http://rnacentral.org/search?q=sheep Click on "miRNA" to narrow the search down in left hand column.

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by genomax27k
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