Where can be found all the annotated miRNAs from a species?
1
1
Entering edit mode
7.2 years ago
Martin B. ▴ 10

I have sequenced small RNA and predicted novel miRNAs in sheep, but the tool I used takes known miRNAs from miRBase. The problem is that that database has not been updated since 2014 and in that time many new miRNAs have been found in sheep. So I wondered were else were those miRNA submited to. In ensembl, for instance, I only find around 100 miRNAs with a name (similar to miRBase) and around 1000 predicted in silico and without any name. This is important because I need to know if my ''novel'' miRNAs are really novel or not.

miRNA RNA-Seq annotation mirbase novel • 1.6k views
ADD COMMENT
2
Entering edit mode
7.2 years ago
GenoMax 143k

http://rnacentral.org/search?q=sheep Click on "miRNA" to narrow the search down in left hand column.

ADD COMMENT

Login before adding your answer.

Traffic: 2647 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6