Hi, I downloaded the pre-compiled binary for sambamba (sambamba_v0.6.6_linux.tar.bz2) from https://github.com/lomereiter/sambamba/releases and untarred it. "view" command is working but when I try "markdup," it says "comand not found." can anyone help here?
I'll describe the whole process better here:
Dload sambamba precompiled binary from here https://github.com/lomereiter/sambamba/releases
unzip and untar it
$ tar -axvf sambamba_v0.6.6_linux.tar.bz2
Check if the commands run properly. Remember that the main program is sambamba_v0.6.6. So run it like this
$ sambamba_v0.6.6 markdup
$ sambamba_v0.6.6 sort
If everything runs fine, now you can add the binary
sambamba_v0.6.6to path as described earlier.