Question: benchmarking/validation tools for CNVs
1
gravatar for Jackie
21 months ago by
Jackie70
United States
Jackie70 wrote:

Are there good benchmarking/validation tools for CNVs? By 'benchmarking/validation', I mean, you feed the tool a truth set and the CNVs called by a CNV caller, then the tool will output something like the sensitivity and specificity of the CNV caller.

Thanks!

ADD COMMENTlink modified 10 months ago by Paul1.2k • written 21 months ago by Jackie70
0
gravatar for Paul
10 months ago by
Paul1.2k
European Union
Paul1.2k wrote:

Hi, did you try Ximmer ?? It is "Ximmer is a tool designed to help users of exome and targeted genomic sequencing data accurately detect and interpret copy number variants (CNVs). Ximmer is not a copy number detection tool itself. Rather, it is a framework for running other copy number detection tools and interpreting their results"

ADD COMMENTlink written 10 months ago by Paul1.2k
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