Question: RNA-seq power analysis
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gravatar for niu.shengyong
3.0 years ago by
niu.shengyong60 wrote:

Hi there, I'm now looking for some good tools for power analysis for RNA-seq. Is there any recommended tool for the RNA-seq fastq files? Thanks!

Sincerely, Simon

rna-seq power analysis • 1.5k views
ADD COMMENTlink modified 3.0 years ago by Carlos Caicedo130 • written 3.0 years ago by niu.shengyong60
2
gravatar for Carlos Caicedo
3.0 years ago by
Colombia/Universidad de Antioquia
Carlos Caicedo130 wrote:

This paper may help.

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by Carlos Caicedo130
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gravatar for andrew.j.skelton73
3.0 years ago by
London
andrew.j.skelton735.9k wrote:

I remember a recent paper on this topic here. You won't be able to do a power calculation from fastq files, as you need more information about the test you're carrying out. You can check out the RNASeqPower package in bioconductor. Alternatively, there's the pwr package in CRAN, which is a good baseline framework of standard power calculations.

ADD COMMENTlink written 3.0 years ago by andrew.j.skelton735.9k

Hi Andrew,

I'll try to use the tools you suggested. Really appreciate it !

ADD REPLYlink written 3.0 years ago by niu.shengyong60
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