Question: RNA-seq power analysis
0
gravatar for niu.shengyong
24 months ago by
niu.shengyong30 wrote:

Hi there, I'm now looking for some good tools for power analysis for RNA-seq. Is there any recommended tool for the RNA-seq fastq files? Thanks!

Sincerely, Simon

rna-seq power analysis • 1.1k views
ADD COMMENTlink modified 24 months ago by Carlos Caicedo130 • written 24 months ago by niu.shengyong30
2
gravatar for Carlos Caicedo
24 months ago by
Colombia/Universidad de Antioquia
Carlos Caicedo130 wrote:

This paper may help.

ADD COMMENTlink modified 24 months ago • written 24 months ago by Carlos Caicedo130
1
gravatar for andrew.j.skelton73
24 months ago by
London
andrew.j.skelton735.7k wrote:

I remember a recent paper on this topic here. You won't be able to do a power calculation from fastq files, as you need more information about the test you're carrying out. You can check out the RNASeqPower package in bioconductor. Alternatively, there's the pwr package in CRAN, which is a good baseline framework of standard power calculations.

ADD COMMENTlink written 24 months ago by andrew.j.skelton735.7k

Hi Andrew,

I'll try to use the tools you suggested. Really appreciate it !

ADD REPLYlink written 24 months ago by niu.shengyong30
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