Question: how to use matplot when you have replicates?
0
gravatar for statfa
3.0 years ago by
statfa530
statfa530 wrote:

Hi,

How can I use matplot() to draw the expression of genes over different conditions when each condition has replicates? Should I calculate the average of expression in each condition and then normalize my data and then scale them and draw them?

I want to draw something like this:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4528625/figure/btv193-F5/

Thanks

matplot read counts • 611 views
ADD COMMENTlink written 3.0 years ago by statfa530
1

From the Trinity RNAseq assembler, see the script $TRINITY_HOME/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl for inspiration.

ADD REPLYlink modified 3.0 years ago • written 3.0 years ago by h.mon29k

Thank you so much. I will try that.

ADD REPLYlink written 3.0 years ago by statfa530
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