Question: how to use matplot when you have replicates?
gravatar for statfa
23 months ago by
statfa450 wrote:


How can I use matplot() to draw the expression of genes over different conditions when each condition has replicates? Should I calculate the average of expression in each condition and then normalize my data and then scale them and draw them?

I want to draw something like this:


matplot read counts • 475 views
ADD COMMENTlink written 23 months ago by statfa450

From the Trinity RNAseq assembler, see the script $TRINITY_HOME/Analysis/DifferentialExpression/ for inspiration.

ADD REPLYlink modified 23 months ago • written 23 months ago by h.mon25k

Thank you so much. I will try that.

ADD REPLYlink written 23 months ago by statfa450
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