Correction of errors or mismatches in the read file

Question

[madhu.9124]

Hi,

I am testing BBMap tool, so I want to correct any errors or mismatch in the read file. How do I go about this process, Any suggestion for command or tool would be appreciated. Can i do this process using samtool?

Thanks

Answer 1

[GenoMax]

BBMap itself is able to error correct (e.g. tadpole.sh and bbnorm.sh from BBMap suite - tadpole and BBMap suite - BBNorm).

[madhu.9124]

thanks, it works well