Question: circos plot to compare genomes plot
0
gravatar for Ric
24 months ago by
Ric240
Australia
Ric240 wrote:

Hello, How to generate circos plot in order to compare genomes?

Thank you in advance,

assembly • 878 views
ADD COMMENTlink modified 11 months ago by Andrewoods90 • written 24 months ago by Ric240
1

What have you tried?

People will be more eager to help if you show your effort you put into this question, and what didn't work. Then we can point out mistakes and put you back on track. Don't expect a full manual here on how to do it.

ADD REPLYlink written 23 months ago by WouterDeCoster39k
0
gravatar for Andrewoods
11 months ago by
Andrewoods90
Andrewoods90 wrote:

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

ADD COMMENTlink written 11 months ago by Andrewoods90

Thank you, but do you have any scripts how to generate the input files for it?

Thank you in advance

ADD REPLYlink written 10 months ago by Ric240

Example input data of shinyCircos are provided here: https://github.com/venyao/shinyCircos/tree/master/example_data.

You need to use data processing tools like Excel, R, shell, etc. to prepare the input data with your raw data.

You can also check this link https://github.com/venyao/shinyCircos/issues/3

ADD REPLYlink written 10 months ago by Andrewoods90
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