Question: circos plot to compare genomes plot
0
gravatar for Ric
2.4 years ago by
Ric280
Australia
Ric280 wrote:

Hello, How to generate circos plot in order to compare genomes?

Thank you in advance,

assembly • 1.1k views
ADD COMMENTlink modified 16 months ago by Andrewoods90 • written 2.4 years ago by Ric280
1

What have you tried?

People will be more eager to help if you show your effort you put into this question, and what didn't work. Then we can point out mistakes and put you back on track. Don't expect a full manual here on how to do it.

ADD REPLYlink written 2.4 years ago by WouterDeCoster42k
0
gravatar for Andrewoods
16 months ago by
Andrewoods90
Andrewoods90 wrote:

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

ADD COMMENTlink written 16 months ago by Andrewoods90

Thank you, but do you have any scripts how to generate the input files for it?

Thank you in advance

ADD REPLYlink written 16 months ago by Ric280

Example input data of shinyCircos are provided here: https://github.com/venyao/shinyCircos/tree/master/example_data.

You need to use data processing tools like Excel, R, shell, etc. to prepare the input data with your raw data.

You can also check this link https://github.com/venyao/shinyCircos/issues/3

ADD REPLYlink written 16 months ago by Andrewoods90
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