Question: circos plot to compare genomes plot
0
gravatar for Ric
15 months ago by
Ric190
Australia
Ric190 wrote:

Hello, How to generate circos plot in order to compare genomes?

Thank you in advance,

assembly • 539 views
ADD COMMENTlink modified 12 weeks ago by Andrewoods90 • written 15 months ago by Ric190
1

What have you tried?

People will be more eager to help if you show your effort you put into this question, and what didn't work. Then we can point out mistakes and put you back on track. Don't expect a full manual here on how to do it.

ADD REPLYlink written 15 months ago by WouterDeCoster33k
0
gravatar for Andrewoods
12 weeks ago by
Andrewoods90
Andrewoods90 wrote:

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

ADD COMMENTlink written 12 weeks ago by Andrewoods90

Thank you, but do you have any scripts how to generate the input files for it?

Thank you in advance

ADD REPLYlink written 10 weeks ago by Ric190

Example input data of shinyCircos are provided here: https://github.com/venyao/shinyCircos/tree/master/example_data.

You need to use data processing tools like Excel, R, shell, etc. to prepare the input data with your raw data.

You can also check this link https://github.com/venyao/shinyCircos/issues/3

ADD REPLYlink written 10 weeks ago by Andrewoods90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1188 users visited in the last hour