Question: circos plot to compare genomes plot
0
gravatar for Ric
13 months ago by
Ric190
Australia
Ric190 wrote:

Hello, How to generate circos plot in order to compare genomes?

Thank you in advance,

assembly • 447 views
ADD COMMENTlink modified 21 days ago by Andrewoods80 • written 13 months ago by Ric190
1

What have you tried?

People will be more eager to help if you show your effort you put into this question, and what didn't work. Then we can point out mistakes and put you back on track. Don't expect a full manual here on how to do it.

ADD REPLYlink written 13 months ago by WouterDeCoster31k
0
gravatar for Andrewoods
21 days ago by
Andrewoods80
Andrewoods80 wrote:

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

ADD COMMENTlink written 21 days ago by Andrewoods80

Thank you, but do you have any scripts how to generate the input files for it?

Thank you in advance

ADD REPLYlink written 8 days ago by Ric190

Example input data of shinyCircos are provided here: https://github.com/venyao/shinyCircos/tree/master/example_data.

You need to use data processing tools like Excel, R, shell, etc. to prepare the input data with your raw data.

You can also check this link https://github.com/venyao/shinyCircos/issues/3

ADD REPLYlink written 8 days ago by Andrewoods80
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