Question: circos plot to compare genomes plot
0
gravatar for Ric
3.2 years ago by
Ric300
Australia
Ric300 wrote:

Hello, How to generate circos plot in order to compare genomes?

Thank you in advance,

assembly • 1.6k views
ADD COMMENTlink modified 2.2 years ago by Andrewoods100 • written 3.2 years ago by Ric300
1

What have you tried?

People will be more eager to help if you show your effort you put into this question, and what didn't work. Then we can point out mistakes and put you back on track. Don't expect a full manual here on how to do it.

ADD REPLYlink written 3.2 years ago by WouterDeCoster44k
0
gravatar for Andrewoods
2.2 years ago by
Andrewoods100
Andrewoods100 wrote:

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

ADD COMMENTlink written 2.2 years ago by Andrewoods100

Thank you, but do you have any scripts how to generate the input files for it?

Thank you in advance

ADD REPLYlink written 2.1 years ago by Ric300

Example input data of shinyCircos are provided here: https://github.com/venyao/shinyCircos/tree/master/example_data.

You need to use data processing tools like Excel, R, shell, etc. to prepare the input data with your raw data.

You can also check this link https://github.com/venyao/shinyCircos/issues/3

ADD REPLYlink written 2.1 years ago by Andrewoods100
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1690 users visited in the last hour