How to map protein isoform IDs to transcripts IDs ?
1
0
Entering edit mode
5.2 years ago
jack ▴ 940

Hi,

I would like to map my protein isoform IDs (refseq) to transcript ids. I was wondering whether can someone help me by that ?

For example gene ZC3H14 produce following three different isoforms: ZC3H14 NP_079100.2,NP_001153575.1,NP_001313239.1 I would like to map this isoforms to the transcripts that encodes these.

RNA-Seq proteomics genome • 1.3k views
ADD COMMENT
0
Entering edit mode
5.2 years ago

In the RefSeq record for each protein, the corresponding transcript is referenced in the DBSOURCE field. You should be able to get this using the eutils tools or download and parse the LRG_RefSeqGene data file. For this kind of things, I much prefer working with EnsEMBLenter link description here.

ADD COMMENT

Login before adding your answer.

Traffic: 1807 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6