Question: dbsnp file for C. elegans
0
gravatar for cristian
3.6 years ago by
cristian260
cristian260 wrote:

Hi,

I want to use this tool here from GATK:

https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_gatk_tools_walkers_varianteval_VariantEval.php

VariantEval

It has the optional option to input a dbsnp file --dbsnp. Does anybody know where I can find such a file for C. elegans?

Also, what is a dbsnp file? I know that dbsnp is a database (https://www.ncbi.nlm.nih.gov/projects/SNP/) but is it also a format or does the dbsnp file come in VCF format?

Thanks.

Best wishes,

C.

ADD COMMENTlink written 3.6 years ago by cristian260

May be wormbase has it?

ADD REPLYlink written 3.6 years ago by Bioinformatics_NewComer320
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