dbsnp file for C. elegans
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7.0 years ago
biomagician ▴ 410

Hi,

I want to use this tool here from GATK:

https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_gatk_tools_walkers_varianteval_VariantEval.php

VariantEval

It has the optional option to input a dbsnp file --dbsnp. Does anybody know where I can find such a file for C. elegans?

Also, what is a dbsnp file? I know that dbsnp is a database (https://www.ncbi.nlm.nih.gov/projects/SNP/) but is it also a format or does the dbsnp file come in VCF format?

Thanks.

Best wishes,

C.

variation-file c.elegans dbsnp gatk • 2.0k views
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May be wormbase has it?

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