Question: Is the score from genewise and exonerate normalized by protein length?
gravatar for dukecomeback
7 months ago by
dukecomeback30 wrote:

Hi, I want to cutoff the results by scores, but I hope there would be no length bias.

alignment • 218 views
ADD COMMENTlink modified 7 months ago by Jean-Karim Heriche14k • written 7 months ago by dukecomeback30
gravatar for Jean-Karim Heriche
7 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche14k wrote:

From the exonerate documentation:

Alignment Scores
Currently, only the raw alignment scores are displayed. This score just is the sum of transistion scores used in the dynamic programming. For example, in the case of a Smith-Waterman alignment, this will be the sum of the substitution matrix scores and the gap penalties.

ADD COMMENTlink written 7 months ago by Jean-Karim Heriche14k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 925 users visited in the last hour