Question: how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analysis
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gravatar for reza
2.9 years ago by
reza220
Iran
reza220 wrote:

hi everyone

i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis by DAVID. how can i do it and how can i rank genes containing most non-synonymous snps.

thanks in advance

go snp non-synonymous • 1.5k views
ADD COMMENTlink written 2.9 years ago by reza220

how is this different from your previous question ? Functional annotation of SNPs and genes containing nonsynonymous SNPs

ADD REPLYlink written 2.9 years ago by Pierre Lindenbaum128k
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