Question: vcf-compare Error "Use of uninitialized value"
1
gravatar for Medhat
23 months ago by
Medhat8.3k
Texas
Medhat8.3k wrote:

I am using vcf command like this: (note: vcf file contains structure variations only )

vcf-compare -p a.vcf.gz b.vcf.gz

both files are processd as follow vcf-sort -> bgzip -> tabix

I got this error

Use of uninitialized value $out in print at /usr/local/bin/vcf-compare line 858.

plot , '-' using 1:2 axes x1y2 with lines lt 0 title "GTs total"
     ^

any idea?

vcf-tools vcf • 753 views
ADD COMMENTlink modified 16 months ago by Enrique López10 • written 23 months ago by Medhat8.3k
0
gravatar for Enrique López
16 months ago by
Málaga
Enrique López10 wrote:

Same problem, any solution yet...

ADD COMMENTlink written 16 months ago by Enrique López10

I was not able to fix this issue, but her is another thread maybe informative
tool to compare sv between two files

ADD REPLYlink written 16 months ago by Medhat8.3k
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