Question: vcf-compare Error "Use of uninitialized value"
gravatar for Medhat
3.3 years ago by
Medhat8.8k wrote:

I am using vcf command like this: (note: vcf file contains structure variations only )

vcf-compare -p a.vcf.gz b.vcf.gz

both files are processd as follow vcf-sort -> bgzip -> tabix

I got this error

Use of uninitialized value $out in print at /usr/local/bin/vcf-compare line 858.

plot , '-' using 1:2 axes x1y2 with lines lt 0 title "GTs total"

any idea?

vcf-tools vcf • 1.1k views
ADD COMMENTlink modified 2.7 years ago by Enrique López10 • written 3.3 years ago by Medhat8.8k
gravatar for Enrique López
2.7 years ago by
Enrique López10 wrote:

Same problem, any solution yet...

ADD COMMENTlink written 2.7 years ago by Enrique López10

I was not able to fix this issue, but her is another thread maybe informative
tool to compare sv between two files

ADD REPLYlink written 2.7 years ago by Medhat8.8k
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