Question: vcf-compare Error "Use of uninitialized value"
1
gravatar for Medhat
3.1 years ago by
Medhat8.7k
Texas
Medhat8.7k wrote:

I am using vcf command like this: (note: vcf file contains structure variations only )

vcf-compare -p a.vcf.gz b.vcf.gz

both files are processd as follow vcf-sort -> bgzip -> tabix

I got this error

Use of uninitialized value $out in print at /usr/local/bin/vcf-compare line 858.

plot , '-' using 1:2 axes x1y2 with lines lt 0 title "GTs total"
     ^

any idea?

vcf-tools vcf • 1.1k views
ADD COMMENTlink modified 2.5 years ago by Enrique López10 • written 3.1 years ago by Medhat8.7k
0
gravatar for Enrique López
2.5 years ago by
Málaga
Enrique López10 wrote:

Same problem, any solution yet...

ADD COMMENTlink written 2.5 years ago by Enrique López10

I was not able to fix this issue, but her is another thread maybe informative
tool to compare sv between two files

ADD REPLYlink written 2.5 years ago by Medhat8.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1609 users visited in the last hour