Question: vcf-compare Error "Use of uninitialized value"
gravatar for Medhat
2.2 years ago by
Medhat8.5k wrote:

I am using vcf command like this: (note: vcf file contains structure variations only )

vcf-compare -p a.vcf.gz b.vcf.gz

both files are processd as follow vcf-sort -> bgzip -> tabix

I got this error

Use of uninitialized value $out in print at /usr/local/bin/vcf-compare line 858.

plot , '-' using 1:2 axes x1y2 with lines lt 0 title "GTs total"

any idea?

vcf-tools vcf • 846 views
ADD COMMENTlink modified 20 months ago by Enrique López10 • written 2.2 years ago by Medhat8.5k
gravatar for Enrique López
20 months ago by
Enrique López10 wrote:

Same problem, any solution yet...

ADD COMMENTlink written 20 months ago by Enrique López10

I was not able to fix this issue, but her is another thread maybe informative
tool to compare sv between two files

ADD REPLYlink written 20 months ago by Medhat8.5k
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