Question: convert SRA file into forward and reverse fastq files
0
gravatar for sunna_j
2.4 years ago by
sunna_j0
sunna_j0 wrote:

I have downloaded .sra data from the SRA (Study SRP022224, Run SRR848976) with SRA Toolkit. I tried to convert it into the fastq files with fastq-dump, but I am not getting two files (one forward, one reverse). I'm just getting one fastq-file. What is my fault?

sequencing next-gen • 1.3k views
ADD COMMENTlink modified 15 months ago by gtrwst90 • written 2.4 years ago by sunna_j0
1

Get the fastq files directly from EBI-ENA.

ADD REPLYlink written 2.4 years ago by genomax75k
1
gravatar for EagleEye
2.4 years ago by
EagleEye6.5k
Sweden
EagleEye6.5k wrote:

A: Downloading data from Short Read Archive

ADD COMMENTlink written 2.4 years ago by EagleEye6.5k
0
gravatar for gtrwst9
15 months ago by
gtrwst90
gtrwst90 wrote:

fastq-dump --split-3 SRR...

This does NOT redownload everything.

ADD COMMENTlink written 15 months ago by gtrwst90
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