Entering edit mode
7.2 years ago
cristina_sabiers
▴
110
Hi!
Hope someone can clarify me this
I downloaded the gtf annotation from
http://www.gencodegenes.org/releases/26lift37.html
I generated my own bed file for annotate just the gen name on my vcf file, the fact is that I miss a few genes for example this one that don't appear (it does with annovar annotation), i also miss genes if I download from http://genome.ucsc.edu
chr1 158368309 T G 1678.36 0 PASS snp 0.000160388 [{'transcript':'NM_001004475.1','gene':'OR10T2','location':'downstream'}]
Does this happens to someone else?
Thanks
It could be differences in the release or version you are using. If it's an old or new version you should expect there to be differences since updates were made, and possibly to your gene as well. This is quite common.