how can i adjust p-values of GO analysis using bonferroni correction? it confused me for several days. it is possible using p.adjust function in R? i d'not know how to set n argument in this function
DAVID tool gave a column named "bonferroni", is it corrected p-value?
Please use ADD COMMENT or ADD REPLY to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your post but as you can see it's not optimal.
Adding an answer should only be used for providing a solution to the question asked.
Read the manual
i read it before you suggest it to me. my goal is select best way to it and also i want to know about n argument
Have you looked at the example code they provide at the bottom?
use FDR correction. In R, use:
p.adjust(pval, method="fdr", ...)