Question: adjusting p-value for GO analysis
0
gravatar for milanlove
3.6 years ago by
milanlove0
milanlove0 wrote:

how can i adjust p-values of GO analysis using bonferroni correction? it confused me for several days. it is possible using p.adjust function in R? i d'not know how to set n argument in this function

go gene • 1.7k views
ADD COMMENTlink modified 3.6 years ago by moxu470 • written 3.6 years ago by milanlove0

DAVID tool gave a column named "bonferroni", is it corrected p-value?

ADD REPLYlink written 3.6 years ago by milanlove0

Please use ADD COMMENT or ADD REPLY to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your post but as you can see it's not optimal. Adding an answer should only be used for providing a solution to the question asked.

ADD REPLYlink written 3.6 years ago by WouterDeCoster45k
2
gravatar for andrew.j.skelton73
3.6 years ago by
London
andrew.j.skelton736.1k wrote:

Read the manual

ADD COMMENTlink written 3.6 years ago by andrew.j.skelton736.1k

i read it before you suggest it to me. my goal is select best way to it and also i want to know about n argument

ADD REPLYlink written 3.6 years ago by milanlove0

Have you looked at the example code they provide at the bottom?

ADD REPLYlink written 3.6 years ago by andrew.j.skelton736.1k
1
gravatar for moxu
3.6 years ago by
moxu470
moxu470 wrote:

use FDR correction. In R, use:

p.adjust(pval,  method="fdr", ...)
ADD COMMENTlink written 3.6 years ago by moxu470
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