Question: GeneAnalytics or IPA?
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gravatar for hamedshoa.hs
2.8 years ago by
hamedshoa.hs0 wrote:

Hello Biostar friends I am doing an RNA-seq experiment. It is not a typical Control-treatment design. It is a descriptive study where I am going to describe pattern of molecular distribution in different parts of my tissue. I did all the data-analyzing and come up with differential gene expression values. but I am very confuse about Geneanalytics tool form LifeMap discovery or Ingenuity Pathway Analysis from Qiagen ? I have access to both. any one can help, I greatly appreciate

rna-seq • 656 views
ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by hamedshoa.hs0

Thank you very much for feedback

ADD REPLYlink written 2.8 years ago by hamedshoa.hs0

working in the company?

ADD REPLYlink written 5 months ago by Shicheng Guo8.2k
0
gravatar for genomax
2.8 years ago by
genomax84k
United States
genomax84k wrote:

I am not familiar with Geneanalytics but with IPA you upload a list of genes in (human, mouse and rat and a few others by orthology) and then have IPA map these genes on to "pathways". In IPA definition of pathways is fluid and includes canonical pathways along with those for diseases (e.g. diabetes).

ADD COMMENTlink written 2.8 years ago by genomax84k

Just remember also add a propper background (all the genes you tested for differential expression) else your results are not valid.

ADD REPLYlink written 2.8 years ago by kristoffer.vittingseerup3.2k
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