Question: fail to install package cummeRbund
0
gravatar for maoyunuo
20 months ago by
maoyunuo0
maoyunuo0 wrote:

i met some problems when installing the packages"cummeRbund",

library(cummeRbund) and it went like

The following object is masked from 'package:GenomicRanges':

    promoters

The following object is masked from 'package:IRanges':

    promoters

The following object is masked from 'package:BiocGenerics':

    conditions

i wanted to check the cummeRbund whether it run correctly, so i typed

cuff <- readCufflinks(dir=system.file("extdata", package="cummeRbund"))

it went like

Creating database C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/cuffData.db
Reading Run Info File C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/run.info
Writing runInfo Table
Reading Read Group Info  C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/read_groups.info
Writing replicates Table
Reading C:/Users/think/Documents/R/win-library/3.4/cummeRbund/extdata/genes.fpkm_tracking
Checking samples table...
Populating samples table...
Error: Column name mismatch.
In addition: There were 50 or more warnings (use warnings() to see the first 50)

i don't know how to solve this. Thanks

rna-seq install cummerbund • 1.1k views
ADD COMMENTlink modified 20 months ago by WouterDeCoster38k • written 20 months ago by maoyunuo0

Here some discussion about this bug link

ADD REPLYlink modified 20 months ago • written 20 months ago by e.rempel760
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