Is there any software/tool that can be used to identify/count the number of feed forward loops and feedback loops in the gene regulatory networks?
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4.2 years ago
sunifeb12 • 0

Hi all Is there any bioinformatics software/tool that can be used to identify/ count the number of Feed Forward loops [FFLs] and Feedback loops [FBLs] in a biological network, say for example, a gene regulatory network?

Thanks

Biological Networks Systems Biology • 1.1k views
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4.2 years ago
Asaf 8.6k

There is a Cytoscape plugin called NetMatch http://apps.cytoscape.org/apps/netmatch . You draw the motif and it finds it in the network.

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