Is there any software/tool that can be used to identify/count the number of feed forward loops and feedback loops in the gene regulatory networks?

Question

[sunifeb12]

Hi all Is there any bioinformatics software/tool that can be used to identify/ count the number of Feed Forward loops [FFLs] and Feedback loops [FBLs] in a biological network, say for example, a gene regulatory network?

Thanks

Answer 1

[Asaf]

There is a Cytoscape plugin called NetMatch http://apps.cytoscape.org/apps/netmatch . You draw the motif and it finds it in the network.