Question: ERROR: File supplied on command line; use -s, -pacbio-raw, -pacbio-corrected, -nanopore-raw, or -nanopore-corrected
0
gravatar for knudnornielsen
9 months ago by
knudnornielsen0 wrote:

Hi everyone, I have tried to run the tutorial on ecoli supplied on the CANU readthedocs http://canu.readthedocs.io/en/latest/quick-start.html. I downloaded the supplied pacbio file and run the script, and then: ERROR: File supplied on command line; use -s, -pacbio-raw, -pacbio-corrected, -nanopore-raw, or -nanopore-corrected. Have anyone experienced this before or have a explanation?

canu assembly • 517 views
ADD COMMENTlink modified 5 weeks ago by lagartija10 • written 9 months ago by knudnornielsen0

I've never used CANU, but have you tried adding the flag "-pacbio-raw"?

ADD REPLYlink written 9 months ago by Brian Bushnell15k

I just tried it, and it didn't help.

ADD REPLYlink written 9 months ago by knudnornielsen0

got answer? having same problem

ADD REPLYlink written 9 months ago by 1234anjalianjali123430
0
gravatar for lagartija
5 weeks ago by
lagartija10
lagartija10 wrote:

I use these flags for the inputs and it works. Are you sure that you have correctly downloaded the fastq or fasta file ? Can you copy your entire canu command so we can see ?

ADD COMMENTlink written 5 weeks ago by lagartija10
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