Question: What is the best way to store clinical and genomic data
gravatar for bartek
19 months ago by
bartek0 wrote:

So I have some tumor/control samples combined with clinical data ; it's exomes and targeted sequencing that are stored on a server I outsource sequencing (bam bai qc...) along with Mutect files, excel/access files with variants. Then I have Clinical data of patients as I am clinician and I am looking to build this database in a bigger more useful repository. As of now it is like 10 patients so I can do all things manually and I know and remember all the samples inside out so I know where and what to look at, but as it will grow I can't assume I can operate like that anymore. I do not see this database growing into 1000s of samples as I take care one case at a time but who knows All in all, should I store variants and clinical data only and leave raw files at the place I outsource data? or store all files and data? I would prefer a solution that is more drag and drop, dumb down for non bioinformatician but if it is impossibile then I am open to more sophisticated way

tumor exome • 636 views
ADD COMMENTlink modified 19 months ago by chen1.8k • written 19 months ago by bartek0

Take a look at possibilities mentioned in this recent thread: NGS data storage and management

ADD REPLYlink written 19 months ago by genomax65k
gravatar for chen
19 months ago by
chen1.8k wrote:

I store the data in a distributed HDFS system.

ADD COMMENTlink written 19 months ago by chen1.8k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1083 users visited in the last hour