Question: Prediction of RNA binding regions in protein
0
gravatar for EagleEye
18 months ago by
EagleEye6.2k
Sweden
EagleEye6.2k wrote:

Hello everyone,

I have a set of proteins (amino acid sequence, structure not know and no homologue secondary structure) where I need to look for binding sites for particular RNA/noncoding (nucleotide sequence).

Things done: I got potential RNA binding regions in protein using RNABindRPlus.

Things need to be done: I have RNA and have to check which part of RNA fragments are binding to the predicted RNA binding sites in the protein.

May be the approach I have taken is wrong all together (I am completely new to this kind of analysis). Please suggest me some methods/approaches to solve this.

ADD COMMENTlink modified 18 months ago • written 18 months ago by EagleEye6.2k

Have a look at the tools in the protein-RNA interaction category on omictools.com. There may be one you could use.

ADD REPLYlink written 18 months ago by Jean-Karim Heriche18k

Finally I got a reply. Thanks a lot for your kind reply. I will look into the list.

ADD REPLYlink written 18 months ago by EagleEye6.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1743 users visited in the last hour