Question: compare genotypes in two vcf files
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gravatar for tarek.mohamed
23 months ago by
tarek.mohamed250
tarek.mohamed250 wrote:

Hi All,

What is the best way to compare genotypes between two different vcf files.

Thanks Tarek

vcf files compare genotypes • 1.1k views
ADD COMMENTlink modified 22 months ago by Biostar ♦♦ 20 • written 23 months ago by tarek.mohamed250
1

see Comparing Genotypes In Two Vcf Files

ADD REPLYlink written 23 months ago by Pierre Lindenbaum122k

how many sample per vcf ? is it the same samples ?

ADD REPLYlink written 23 months ago by Pierre Lindenbaum122k

Hi Pierre,

I have only one sample per vcf file. Basically, I has genotype calls from illumina final report, then I converted them to ped then to vcf files.

Thanks Tarek

ADD REPLYlink written 23 months ago by tarek.mohamed250
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