compare genotypes in two vcf files
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6.6 years ago
tarek.mohamed ▴ 360

Hi All,

What is the best way to compare genotypes between two different vcf files.

Thanks
Tarek
vcf genotype • 3.2k views
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see Comparing Genotypes In Two Vcf Files

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how many sample per vcf ? is it the same samples ?

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Hi Pierre,

I have only one sample per vcf file. Basically, I has genotype calls from illumina final report, then I converted them to ped then to vcf files.

Thanks Tarek

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