Question: compare genotypes in two vcf files
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gravatar for tarek.mohamed
2.8 years ago by
tarek.mohamed260
tarek.mohamed260 wrote:

Hi All,

What is the best way to compare genotypes between two different vcf files.

Thanks Tarek

vcf files compare genotypes • 1.6k views
ADD COMMENTlink modified 2.7 years ago by Biostar ♦♦ 20 • written 2.8 years ago by tarek.mohamed260
1

see Comparing Genotypes In Two Vcf Files

ADD REPLYlink written 2.8 years ago by Pierre Lindenbaum129k

how many sample per vcf ? is it the same samples ?

ADD REPLYlink written 2.8 years ago by Pierre Lindenbaum129k

Hi Pierre,

I have only one sample per vcf file. Basically, I has genotype calls from illumina final report, then I converted them to ped then to vcf files.

Thanks Tarek

ADD REPLYlink written 2.8 years ago by tarek.mohamed260
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