compare genotypes in two vcf files
0
0
Entering edit mode
4.1 years ago
tarek.mohamed ▴ 300

Hi All,

What is the best way to compare genotypes between two different vcf files.

Thanks Tarek

compare genotypes vcf files • 2.5k views
ADD COMMENT
1
Entering edit mode
ADD REPLY
0
Entering edit mode

how many sample per vcf ? is it the same samples ?

ADD REPLY
0
Entering edit mode

Hi Pierre,

I have only one sample per vcf file. Basically, I has genotype calls from illumina final report, then I converted them to ped then to vcf files.

Thanks Tarek

ADD REPLY

Login before adding your answer.

Traffic: 2746 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6