Question: Cufflinks analysis of Tophat BAM file
0
gravatar for qudrat
3.1 years ago by
qudrat70
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat70 wrote:

When I split BAM file by chromosome and then Cufflinks by chromosome-wise takes very less time compared to Cufflinks on whole BAM file. Can somebody help me explain this?

rna-seq alignment • 896 views
ADD COMMENTlink modified 3.1 years ago by Kevin Blighe66k • written 3.1 years ago by qudrat70
2
gravatar for Kevin Blighe
3.1 years ago by
Kevin Blighe66k
Kevin Blighe66k wrote:

Your RAM and I/O are being used more efficiently when you split the file.

ADD COMMENTlink written 3.1 years ago by Kevin Blighe66k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1299 users visited in the last hour