Does anyone know a database or a website, where I can find growth mediums, that can be used for bioinformatical simulations? I've joined a research group where we use cobrapy python package and I have to simulate in silico such experiments, which were done in vitro. I can create my own database of growth mediums, but it would help me a lot and save time. Any help here would be appreciated! :)
If you are working with E. coli http://prokaryomics.com/ contains quite a wealth of data. In our work for the DD-DeCaF project, we have integrated the prokaryomics data sets in our platform app.dd-decaf.eu where you can apply them to basic simulations of E. coli models.