Question: Good quality mock community?
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gravatar for agata88
7 days ago by
agata88610
Poland
agata88610 wrote:

Hi all!

Do you know any source of good quality fastq reads (MiSeq, HiSeq) of Mock Community with expected taxonomy?

I was working with mokrobiota but the fastq reads have very low quality and it is not possible to compare results.

Any help will be much appreciated,

Best,

Agata

mock 16s • 117 views
ADD COMMENTlink modified 7 days ago • written 7 days ago by agata88610

Julia Segre's lab at NIH uses a mock community with their experiments (have heard her mention that in her talks). Have you tried to look at her papers. I assume you just need the data and not the actual samples.

ADD REPLYlink modified 7 days ago • written 7 days ago by genomax34k

Have you tried BEI resources?

BEI resources

ADD REPLYlink modified 7 days ago • written 7 days ago by sridhar56100

Thanks, but I am not sure if there are fastq files? for example for HM-782D mock community. I am looking for fastq R1/R2 reference which will include exactly 20 species - not stored fastq file of published data (which is very often deficient)

ADD REPLYlink written 7 days ago by agata88610
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