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6.6 years ago
Medhat
9.7k
I am running Honey.py spots using 10 threads, and I have this error in log file:
2017-10-11 14:46:53,098 [INFO] |6:SpotCaller|RateMean 0.060716 -- RateStd 0.238808
[e0129:31253] *** Process received signal ***
[e0129:31253] Signal: Segmentation fault (11)
[e0129:31253] Signal code: Address not mapped (1)
[e0129:31253] Failing at address: 0x1581078
[e0129:31254] *** Process received signal ***
[e0129:31254] Signal: Segmentation fault (11)
[e0129:31254] Signal code: Address not mapped (1)
[e0129:31254] Failing at address: 0x1581078
2017-10-11 14:46:57,093 [INFO] |3:SpotCaller|COV processing
2017-10-11 14:46:57,093 [INFO] |3:SpotCaller|MaxCov:486 MeanCov:2 StdCov:2 MinCov:2
2017-10-11 14:46:57,095 [INFO] |3:SpotCaller|INS processing
2017-10-11 14:46:58,642 [INFO] |7:SpotCaller|RateMean 0.031061 -- RateStd 0.173483
[e0129:31257] *** Process received signal ***
[e0129:31257] Signal: Segmentation fault (11)
[e0129:31257] Signal code: Address not mapped (1)
[e0129:31257] Failing at address: 0x1581078
2017-10-11 14:47:08,440 [INFO] |3:SpotCaller|RateMean 0.059855 -- RateStd 0.237218
2017-10-11 14:47:11,862 [INFO] |3:SpotCaller|DEL processing
First is there is any idea why I have this error? also I see error then some result, is the program handled this error or shall I cancel the run and rerun it with lower thread number?
This is possibly a bug in the software. In C, "Address not mapped" suggests incorrect memory allocation or a corrupted pointer. You should probably report this to the software authors.
Is there a work round to make it run normally? I do not think the author will fix it right away
I don't know this software. Making it work would depends on what exactly is causing it to fail. You would need to run it under a debugger to find this out. Besides a bug, it could also be a compatibility issue with one of the underlying libraries, check the version requirements for the dependencies. It could be that using fewer threads will make it work. In any case, I wouldn't trust output of a software that throws errors.
Thanks a lot, I send the error to the author, tried with fewer threads still does not work.