Question: Are there any tools to simulate mutations?
0
gravatar for MAPK
4 weeks ago by
MAPK1.1k
United States
MAPK1.1k wrote:

I am working on a gene mutation method. I am trying to test my tool using 1000 genome vcf file (multigenome vcf file). I am using only one chromosome(as that should be enough to test my algorithm). I now want to simulate mutations in ~10 samples of 1K genome project vcf file. Can someone please suggest me a tool that can be used to simulate mutation in a multgenome vcf file?

mutation vcf • 211 views
ADD COMMENTlink modified 4 weeks ago by Gabriel R.2.1k • written 4 weeks ago by MAPK1.1k
2
gravatar for Gabriel R.
4 weeks ago by
Gabriel R.2.1k
Center for Geogenetik Københavns Universitet
Gabriel R.2.1k wrote:

msprime (https://github.com/jeromekelleher/msprime). You can simulate a demography of say 10 individuals and output segregating sites as VCF. You can even plug in a recombination map.

ADD COMMENTlink written 4 weeks ago by Gabriel R.2.1k
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