sorting bam file using Picard tools
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3.7 years ago

Unable to access jarfile picard-tools/SortSam.jar i am getting error like this can anybody help me to rectify this for SNP and indels calling

software error • 846 views
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The path is incorrect or the file does not exist. Check where SortSam.jar is.

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3.7 years ago

your manual/doc is old there is no such SortSam.jar , the modern command should look like

java -jar /path/to/picard.jar SortSam
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