Question: sorting bam file using Picard tools
gravatar for anithabioinfor
3.1 years ago by
South Korea
anithabioinfor0 wrote:

Unable to access jarfile picard-tools/SortSam.jar i am getting error like this can anybody help me to rectify this for SNP and indels calling

software error • 726 views
ADD COMMENTlink modified 3.1 years ago by Pierre Lindenbaum131k • written 3.1 years ago by anithabioinfor0

The path is incorrect or the file does not exist. Check where SortSam.jar is.

ADD REPLYlink written 3.1 years ago by WouterDeCoster44k
gravatar for Pierre Lindenbaum
3.1 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum131k wrote:

your manual/doc is old there is no such SortSam.jar , the modern command should look like

java -jar /path/to/picard.jar SortSam
ADD COMMENTlink written 3.1 years ago by Pierre Lindenbaum131k
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