Question: sorting bam file using Picard tools
0
gravatar for anithabioinfor
2.8 years ago by
South Korea
anithabioinfor0 wrote:

Unable to access jarfile picard-tools/SortSam.jar i am getting error like this can anybody help me to rectify this for SNP and indels calling

software error • 653 views
ADD COMMENTlink modified 2.8 years ago by Pierre Lindenbaum129k • written 2.8 years ago by anithabioinfor0

The path is incorrect or the file does not exist. Check where SortSam.jar is.

ADD REPLYlink written 2.8 years ago by WouterDeCoster44k
0
gravatar for Pierre Lindenbaum
2.8 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum129k wrote:

your manual/doc is old there is no such SortSam.jar , the modern command should look like

java -jar /path/to/picard.jar SortSam
ADD COMMENTlink written 2.8 years ago by Pierre Lindenbaum129k
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