Question: sorting bam file using Picard tools
gravatar for anithabioinfor
22 months ago by
South Korea
anithabioinfor0 wrote:

Unable to access jarfile picard-tools/SortSam.jar i am getting error like this can anybody help me to rectify this for SNP and indels calling

software error • 503 views
ADD COMMENTlink modified 22 months ago by Pierre Lindenbaum122k • written 22 months ago by anithabioinfor0

The path is incorrect or the file does not exist. Check where SortSam.jar is.

ADD REPLYlink written 22 months ago by WouterDeCoster40k
gravatar for Pierre Lindenbaum
22 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum122k wrote:

your manual/doc is old there is no such SortSam.jar , the modern command should look like

java -jar /path/to/picard.jar SortSam
ADD COMMENTlink written 22 months ago by Pierre Lindenbaum122k
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