Unable to access jarfile picard-tools/SortSam.jar
i am getting error like this can anybody help me to rectify this for SNP and indels calling
The path is incorrect or the file does not exist. Check where SortSam.jar is.
your manual/doc is old there is no such SortSam.jar , the modern command should look like
java -jar /path/to/picard.jar SortSam